PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G195300.1
Common NameB456_004G195300, LOC105792036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 326aa    MW: 36602.9 Da    PI: 8.194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G195300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20182232255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp+ +g   r++lg+f+ta eAaka+++a+ kl+g
  Gorai.004G195300.1 182 HYRGVRQRP-WGKFAAEIRDPTRRG--SRIWLGTFDTAIEAAKAYDRAAFKLRG 232
                         7********.**********97665..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-32181241IPR001471AP2/ERF domain
SMARTSM003803.5E-37182246IPR001471AP2/ERF domain
PfamPF008477.1E-14182232IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23182241IPR016177DNA-binding domain
CDDcd000182.96E-31182240No hitNo description
PROSITE profilePS5103224.171182240IPR001471AP2/ERF domain
PRINTSPR003671.4E-13183194IPR001471AP2/ERF domain
PRINTSPR003671.4E-13222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
METSSEISTA LQYIQHYLLD ELSPVGLGNF SNENRWINEV KAEVSTSQPE SLYSQTSSSG  60
SSLTEANFNC LENDDFFKFS PNFRGFQPNG SDVFEYESKP QIIDLITPKS FPSNASSLEF  120
ETKPKITELS TAKPQVSSGC NSKIRKPSLK ISLPHKVEWI QFDKPDLTRP KPKKSNSEDN  180
RHYRGVRQRP WGKFAAEIRD PTRRGSRIWL GTFDTAIEAA KAYDRAAFKL RGSKAILNFP  240
LEAGKLESGA SDGERKRSRD NSEGEEKRAK VVKRESENVT KARDNGDAPL TPSNWTAFWD  300
LDNEIKEIFN VPLLSPLGFS HVMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29181241161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4108656e-66KC410865.1 Gossypium hirsutum ethylene-responsive transcription factor (ERF9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012475851.10.0PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A0D2N0W90.0A0A0D2N0W9_G
STRINGPOPTR_0001s15400.11e-79(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.17e-67ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]